PUBLICATIONS

Qian Z, Fernald AA, Godley LA, Larson RA, Le Beau MM (2002) Expression profiling of CD34+ hematopoietic stem/ progenitor cells reveals distinct subtypes of therapy-related acute myeloid leukemia. Proc. Natl. Acad. Sci. USA 99:14925-14930.

Kataoka Y, Murley JS, Khodarev NN, Weichselbaum RR, Grdina DJ (2002) Activation of the nuclear transcription factor kappaB (NFkappaB) and differential gene expression in U87 glioma cells after exposure to the cytoprotector amifostine. Int J Radiat Oncol Biol Phys. 53(1):180-9.

Taddeo B, Esclatine A, Roizman B (2002) The patterns of accumulation of cellular RNAs in cells infected with a wild-type and a mutant herpes simplex virus 1 lacking the virion host shutoff gene. Proc. Natl. Acad. Sci. USA 99:17031-6.

N. N. Khodarev, J. Yu, E. Nodzenski, J. S. Murley, Y. Kataoka, C. K. Brown, D. J. Grdina, and Ralph R. Weichselbaum (2002) Method of RNA purification from endothelial cells for DNA arrays experiments. Biotechniques 32:316-320.

N. N. Khodarev, , J. Park, Y. Kataoka, E. Nodzenski, L. Khorasani, S. Hellman, B. Roizman, R. R. Weichselbaum, C. Pelizzari (2003) Receiver operating characteristic analysis: a general tool for DNA array data filtration and performance estimation. Genomics 81:202-209.

N.N. Khodarev, Jianqing Yu, E. Nodzenski, T. Darga, C. K. Brown, H. J. Mauceri, R. Yassari, N. Gupta, R. R. Weichselbaum (2003) Tumour-endothelial interactions in co-culture: coordinated changes of gene expression profiles and phenotypic properties of endothelial cells. Journal of Cell Science 116:1013-1022.

Robert A. Anders, Lisa M. Yerian, Maria Tretiakova, Jon M. Davison, Richard J. Quigg, Peter H. Domer, Jamie Hoberg, John Hart (2003) cDNA Microarray Analysis of Macroregenerative and Dysplastic Nodules in End Stage Hepatitis C Virus Induced liver disease. American Journal of Pathology 162:991-1000.

Xinmin Li, Wei Zheng, Yan Chun Li (2003) Altered gene expression profile in the kidney of vitamin D receptor knockout mice. Journal of Cellular Biochemistry 89:709–719.

Lihua Bao, Jian Zhou, V. Michael Holers, Richard J. Quigg (2003) Excessive matrix accumulation in the kidneys of MRL/lpr lupus mice is dependent upon complement activation. Journal of the American Society of Nephrology14:2516-25.

Ying Peng, Quan Kang, Hongwei Cheng, Xinmin Li, Michael H. Sun, Wei Jiang, Hue H. Luu, Jae Yoon Park, Rex C. Haydon, Tong-Chuan He (2003) Transcriptional Characterization of Bone Morphogenic Proteins (BMPs)-Mediated Osteogenic Signaling. Journal of Cellular Biochemistry 90:1149-65.

Alexander JJ, Bao L, Jacob A, Kraus DM, Holers VM, Quigg RJ (2003) Administration of the soluble complement inhibitor, Crry-Ig, reduces inflammation and aquaporin 4 expression in lupus cerebritis. Biochim Biophys Acta:1639:169-76.

Wei Wu, Shamita Chaudhuri, Deanna R. Brickley, Diana Pang, Theodore Karrison, Suzanne D. Conzen (2003) Microarray analysis reveals glucocorticoid-related survival genes that are associated with inhibition of apoptosis in breast epithelial cells. Cancer Res. 64:1757-64.

Ying Peng, Quan Kang, Qing Luo, Wei Jiang, Weike Si, Bernard A. Liu, Hue H. Luu, Jong Kyung Park, Xinmin Li, Jeffrey Luo, Anthony G. Montag, Rex C. Haydon, Tong-Chuan He (2004) Inhibitor of DNA Binding/Differentiation Helix-Loop-Helix Proteins Mediate Bone Morphogenetic Protein-induced Osteoblast Differentiation of Mesenchymal Stem Cells. J. Biol. Chem. 279:32941-32949.

Nikolai N. KHODAREV, Edwardine LABAY, Thomas DARGA, Jianqing YU, Helena MAUCERI, Nalin GUPTA, Yasushi KATAOKA and Ralph R. WEICHSELBAUM (2004) Endothelial cells co-cultured with wild-type and dominant/negative p53-transfected glioblastoma cells exhibit differential sensitivity to radiation-induced apoptosis. Int. J. Cancer 109:214–219.

Nikolai N. Khodarev, Michael Beckett, Edwardine Labay, Thomas Darga, Bernard Roizman,and Ralph R. Weichselbaum (2004) STAT1 is overexpressed in tumors selected for radioresistance and confers protection from radiation in transduced sensitive cells. PNAS 101:1714-19.

Barnhart BC, Legembre P, Pietras E, Bubici C, Franzoso G, Peter ME (2004) CD95 ligand induces motility and invasiveness of apoptosis-resistant tumor cells. EMBO J. 23:3175-85.

Jing Li, Thomas Moran, Eric Swanson, Christina Julian, Jeremy Harris, Denise K. Bonen, Matija Hedl, Dan L. Nicolae, Clara Abraham and Judy H. Cho (2004) Regulation of IL-8 and IL-1ß expression in Crohn's disease associated NOD2/CARD15 mutations. Human Molecular Genetics 13:1715-1725.

Wei Wu, Travis Pew, Min Zou, Diana Pang, and Suzanne D. Conzen (2005) Glucocorticoid Receptor-induced MAPK Phosphatase-1 (MPK-1) Expression Inhibits Paclitaxel-associated MAPK Activation and Contributes to Breast Cancer Cell Survival. J Biol Chem.280:4117-24.

Kimberly A. Dittmar, Michael A. Sørensen, Johan Elf , Måns Ehrenberg & Tao Pan (2005) Selective charging of tRNA isoacceptors induced by amino-acid starvation. EMBO J 6:151-157.

Zagranichnaya TK, Wu X, Danos A, Villereal ML (2005) Gene expression profiles in HEK-293 cells with low or high store-operated calcium entry: Can regulatory as well as regulated genes be identified? Physiol Genomics 21:14–33.

Wu W, Pew T, Zou M, Pang D, Conzen SD (2005) Glucocorticoid receptor-induced MAPK phosphatase-1(MPK-1) expression inhibits paclitaxel-associated MAPK activation and contributes to breast cancer cell survival. J Biol Chem 280:4117-24.

Zou M, Conzen SD (2005) A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data. Bioinformatics 21:71-9.

Xinmin Li, Richard J. Quigg, Jian Zhou, James T. Ryaby, Hali Wang (2005) Early Signals for Fracture Healing. J Cell Biochem 95:189-205.

Xinmin Li, Jaejung Kim, Jian Zhou, Weikuan Gu, and Richard Quigg (2005) Use of Signal-Dependent Thresholds to Determine Significant Changes in Microarray Data Analyses. Genetics and Molecular Biology 28:191-200.

Xinmin Li, Richard Quigg (2005) An Integrated Strategy for the Optimization of Microarray Data Interpretation. Gene Expression, Vol. 12, pp. 223–230